ITTC Project


MRI: Acquisition of Computing Equipment for Supporting Data-Intensive Bioinformatics Research at the University of Kansas

Project Award Date: 09-01-2013



Description

The objective of this proposal is to acquire a 100,000-core hybrid cyberinfrastructure to support the fast growing computing needs of bioinformatics research at the University of Kansas. There is a clear trend in biological research toward data driven science, in which large amounts of information coming from instruments for automated sequencing, high throughput screening systems, and other high volume robotic analytical techniques, is mined and analyzed to look
for patterns from which hypotheses can be developed. Along with data-driven science as a source of insights, detailed modeling and simulation of biological structures and processes are becoming indispensable tools to test models, to evaluate experimental methodologies and to interpret their results. These two factors are driving the need for computing capacity in across a broad spectrum of biological research nationally. At KU we observe the same trend. KU research
has experienced steady growth in data-intensive science research program awards that rely on High Performance Computing (HPC) resources. In order to properly support current and near-term research goals and to maintain a forward position in computationally intensive research we propose to construct a computational instrument aimed at leading research in a wide range of research areas with a primary focus on bioinformatics.


Investigators

Faculty Investigator(s): Jun Huan (PI)

Student Investigator(s): Chao Lan, Xiaoli Li, Joseph St. Amand, Meenakshi Mishra, Gowtham Golla, Keith Monaghan


Partner with ITTC

The Information and Telecommunication Technology Center at the University of Kansas has developed several assistance policies that enhance interactions between the Center and local, Kansas, or national companies. 

ITTC assistance includes initial free consulting (normally one to five hours). If additional support is needed, ITTC will offer one of the following approaches: 

Sponsored Research Agreement

Individuals and organizations can enter into agreements with KUCR/ITTC and provide funds for sponsored research to be performed at ITTC with the assistance of faculty, staff and students.

Licensing and Royalty/Equity Agreement

An ITTC goal is the development of investment-grade technologies for transfer to, and marketing by, local, Kansas, and national businesses. To enhance this process, the Center has developed flexible policies that allow for licensing, royalty, and equity arrangements to meet both the needs of ITTC and the company.

Commercialization Development

Companies with a technology need that can be satisfied with ITTC's resources can look to us for assistance. We can develop a relationship with interested partners that will provide for the development of a technology suited for commercialization.

ITTC Resource Access

ITTC resources, including computers and software systems, may be made available to Kansas companies in accordance with the Center's mission and applicable Regents and University policies.

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